There are no visualisations available for the following files:
- Variations file (VCF)
Phylogenetic tree is currently in construction.
METADATA
*TBD : To Be Determined; NA : Non-applicable
- Sample name
- ATCC_PRA-179
- Genbank accession number
- GCA_013115115.1
- Strain
- NA
- Isolate
- ATCC PRA-179
- Host
- Ruditapes philippinarum
- Collection year
- 2002
- Collection date
- Sept. 1, 2002
- Country of origin
- Japan
- Localisation
- Mie
- Latitude/Longitude
- Unknown
- Nature of coordinates
- Unknown
- Host stage
- Unknown
- Isolation source
- Unknown
- Pool/Individual
- Unknown
- Sample conservation method
- Unknown
- Sequencing technology
- Illumina
- Sequencer
- NextSeq 500
- Information on sequencing
- Expected final version : yes
- Number of reads
- Unknown
- Sequence coverage
- 266
- Sequence size (BP)
- 39860647
- Pathogen charge
- Unknown
- Assembly
- SPAdes v. 3.13.0
- Genome type
- Partial
- Structure
- Unknown
- Name of submitter
- Daniel Bogema
- Organization
- NSW
- Publication DOI
- 10.1016/j.ygeno.2020.09.064
- Notes
- NA
- Number of contigs
- 3531