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- Variations file (VCF)
Phylogenetic tree is currently in construction.
GENOMIC STRUCTURE - Help
In MoPSeq-DB, Vibrio aestuarianus chromosomes are artificially created for partial genomes. You can find futher explanations on the section II.1.a of the Design page.
Partial
METADATA
*TBD : To Be Determined; NA : Non-applicable
- Sample name
- 02_041
- Genbank accession number
- GCF_012395215.1
- Strain
- 02/041
- Isolate
- CIP 109791T=LMG 24517T
- Host
- Magallana gigas
- Collection year
- 2002
- Collection date
- June 5, 2002
- Country of origin
- France
- Localisation
- Argenton Brittany
- Latitude/Longitude
- Unknown
- Nature of coordinates
- Unknown
- Host stage
- Unknown
- Isolation source
- Oyster hemolymph
- Pool/Individual
- Individual
- Sample conservation method
- -80°C
- Sequencing technology
- Sanger
- Sequencer
- 454
- Information on sequencing
- Unknown
- Number of reads
- Unknown
- Sequence coverage
- 100
- Sequence size (BP)
- 4196441
- Pathogen charge
- Unknown
- Assembly
- Newbler v. 3
- Genome type
- Partial
- Structure
- Unknown
- Name of submitter
- Aurelie Mesnil
- Organization
- IFREMER
- Notes
- subsp. Francensis
- Number of contigs
- 8