There are no visualisations available for the following files:
- Variations file (VCF)
Phylogenetic tree is currently in construction.
GENOMIC STRUCTURE - Help
In MoPSeq-DB, Vibrio aestuarianus chromosomes are artificially created for partial genomes. You can find futher explanations on the section II.1.a of the Design page.
Partial
METADATA
*TBD : To Be Determined; NA : Non-applicable
- Sample name
- 12-130
- Genbank accession number
- GCF_944738065.1
- Strain
- 12-130
- Isolate
- NA
- Host
- Magallana gigas
- Collection year
- 2012
- Collection date
- Sept. 17, 2012
- Country of origin
- France
- Localisation
- Agnas Charente Maritime
- Latitude/Longitude
- Unknown
- Nature of coordinates
- Unknown
- Host stage
- < 1 year
- Isolation source
- Oyster
- Pool/Individual
- Individual
- Sample conservation method
- -80°C
- Sequencing technology
- Unknown
- Sequencer
- Unknown
- Information on sequencing
- Unknown
- Number of reads
- Unknown
- Sequence coverage
- 100
- Sequence size (BP)
- 4286418
- Pathogen charge
- Unknown
- Assembly
- Unknown
- Genome type
- Partial
- Structure
- Unknown
- Name of submitter
- Unknown
- Organization
- STATION BIOLOGIQUE DE ROSCOFF
- Publication DOI
- Unknown
- Notes
- NA
- Number of contigs
- 80