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- Variations file (VCF)
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GENOMIC STRUCTURE - Help
In MoPSeq-DB, Vibrio aestuarianus chromosomes are artificially created for partial genomes. You can find futher explanations on the section II.1.a of the Design page.
Partial
METADATA
*TBD : To Be Determined; NA : Non-applicable
- Sample name
- 12_016
- Genbank accession number
- GCA_028858495.1
- Strain
- 12_016
- Isolate
- NA
- Host
- Magallana gigas
- Collection year
- 2012
- Collection date
- March 12, 2012
- Country of origin
- France
- Localisation
- Bassin de Marennes Oléron - La Floride (écloserie Ifremer)
- Latitude/Longitude
- 45480366N,001088727W
- Nature of coordinates
- Approximated
- Host stage
- 1-2 years
- Isolation source
- Gills and mantle
- Pool/Individual
- Individual
- Sample conservation method
- -80°C
- Sequencing technology
- PacBio
- Sequencer
- Sequel II
- Information on sequencing
- Unknown
- Number of reads
- 9203
- Sequence coverage
- 40
- Sequence size (BP)
- 4329368
- Pathogen charge
- Unknown
- Assembly
- FLYE v. 2.8.3
- Genome type
- Partial
- Structure
- Unknown
- Name of submitter
- Aurelie Mesnil
- Organization
- IFREMER
- Publication DOI
- https://doi.org/10.1111/mec.16910
- Notes
- subsp. Francensis clade A
- Number of contigs
- 4