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- Variations file (VCF)
Phylogenetic tree is currently in construction.
GENOMIC STRUCTURE - Help
In MoPSeq-DB, Vibrio aestuarianus chromosomes are artificially created for partial genomes. You can find futher explanations on the section II.1.a of the Design page.
Partial
METADATA
*TBD : To Be Determined; NA : Non-applicable
- Sample name
- 12_122_3T3
- Genbank accession number
- GCF_011090275.1
- Strain
- 12/122 3T3
- Isolate
- LMG 31436T=DSM 109723T
- Host
- Cerastoderma edule
- Collection year
- 2012
- Collection date
- Aug. 27, 2012
- Country of origin
- France
- Localisation
- Baie de Somme Normandy
- Latitude/Longitude
- 50140274N,001341913E
- Nature of coordinates
- Approximated
- Host stage
- < 1 year
- Isolation source
- Gills and mantle
- Pool/Individual
- Individual
- Sample conservation method
- -80°C
- Sequencing technology
- Illumina
- Sequencer
- MiSeq
- Information on sequencing
- Unknown
- Number of reads
- Unknown
- Sequence coverage
- 21
- Sequence size (BP)
- 4350651
- Pathogen charge
- Unknown
- Assembly
- SPAdes v. 3.11
- Genome type
- Partial
- Structure
- Unknown
- Name of submitter
- Aurelie Mesnil
- Organization
- IFREMER
- Publication DOI
- Unknown
- Notes
- subsp. cardii
- Number of contigs
- 205