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- Variations file (VCF)
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GENOMIC STRUCTURE - Help
In MoPSeq-DB, Vibrio aestuarianus chromosomes are artificially created for partial genomes. You can find futher explanations on the section II.1.a of the Design page.
Partial
METADATA
*TBD : To Be Determined; NA : Non-applicable
- Sample name
- 15_075_3T2
- Genbank accession number
- GCF_011090175.1
- Strain
- 15/075 3T2
- Isolate
- LMG 31440=DSM 109720
- Host
- Cerastoderma edule
- Collection year
- 2015
- Collection date
- July 29, 2015
- Country of origin
- France
- Localisation
- Baie de Somme
- Latitude/Longitude
- Unknown
- Nature of coordinates
- Unknown
- Host stage
- Mix
- Isolation source
- Gills and mantle
- Pool/Individual
- Individual
- Sample conservation method
- -80°C
- Sequencing technology
- Ion Torrent
- Sequencer
- Unknown
- Information on sequencing
- Unknown
- Number of reads
- Unknown
- Sequence coverage
- 93
- Sequence size (BP)
- 4394098
- Pathogen charge
- Unknown
- Assembly
- SPAdes v. 3.11
- Genome type
- Partial
- Structure
- Unknown
- Name of submitter
- Aurelie Mesnil
- Organization
- IFREMER
- Publication DOI
- Unknown
- Notes
- subsp. cardii
- Number of contigs
- 205