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- Variations file (VCF)
Phylogenetic tree is currently in construction.
GENOMIC STRUCTURE - Help
In MoPSeq-DB, Vibrio aestuarianus chromosomes are artificially created for partial genomes. You can find futher explanations on the section II.1.a of the Design page.
Partial
METADATA
*TBD : To Be Determined; NA : Non-applicable
- Sample name
- LMG_7909
- Genbank accession number
- GCF_012395185.1
- Strain
- LMG 7909
- Isolate
- 03008T souche type
- Host
- Oyster
- Collection year
- 1983
- Collection date
- Unknown
- Country of origin
- USA
- Localisation
- Oregon, Yaquina Bay
- Latitude/Longitude
- Unknown
- Nature of coordinates
- Unknown
- Host stage
- Unknown
- Isolation source
- Unknown
- Pool/Individual
- Unknown
- Sample conservation method
- -80°C
- Sequencing technology
- Illumina
- Sequencer
- MiSeq
- Information on sequencing
- Unknown
- Number of reads
- Unknown
- Sequence coverage
- 50
- Sequence size (BP)
- 4149197
- Pathogen charge
- Unknown
- Assembly
- SPAdes v. 3
- Genome type
- Partial
- Structure
- Unknown
- Name of submitter
- Aurelie Mesnil
- Organization
- IFREMER
- Notes
- NA
- Number of contigs
- 111