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- Variations file (VCF)
Phylogenetic tree is currently in construction.
GENOMIC STRUCTURE - Help
In MoPSeq-DB, Vibrio aestuarianus chromosomes are artificially created for partial genomes. You can find futher explanations on the section II.1.a of the Design page.
Partial
METADATA
*TBD : To Be Determined; NA : Non-applicable
- Sample name
- MI_20_20
- Genbank accession number
- GCA_028857875.1
- Strain
- MI_20_20
- Isolate
- NA
- Host
- Magallana gigas
- Collection year
- 2020
- Collection date
- Sept. 15, 2020
- Country of origin
- Ireland
- Localisation
- Co. Donegal – Gweebarra
- Latitude/Longitude
- Unknown
- Nature of coordinates
- Unknown
- Host stage
- > 2 years
- Isolation source
- Gills and mantle
- Pool/Individual
- Individual
- Sample conservation method
- -80°C
- Sequencing technology
- Illumina
- Sequencer
- Unknown
- Information on sequencing
- Unknown
- Number of reads
- 2306952
- Sequence coverage
- 84
- Sequence size (BP)
- 3997894
- Pathogen charge
- Unknown
- Assembly
- SPAdes v. 3.13.1
- Genome type
- Partial
- Structure
- Unknown
- Name of submitter
- Aurelie Mesnil
- Organization
- IFREMER
- Publication DOI
- https://doi.org/10.1111/mec.16910
- Notes
- subsp. Francensis clade A
- Number of contigs
- 158