There are no visualisations available for the following files:
- Variations file (VCF)
Phylogenetic tree is currently in construction.
GENOMIC STRUCTURE - Help
In MoPSeq-DB, Vibrio aestuarianus chromosomes are artificially created for partial genomes. You can find futher explanations on the section II.1.a of the Design page.
Partial
METADATA
*TBD : To Be Determined; NA : Non-applicable
- Sample name
- O-00-16-10
- Genbank accession number
- GCF_013114495.1
- Strain
- O-00-16-10
- Isolate
- NA
- Host
- Magallana gigas
- Collection year
- Unknown
- Collection date
- Unknown
- Country of origin
- USA
- Localisation
- Puget Sound Washington
- Latitude/Longitude
- Unknown
- Nature of coordinates
- Unknown
- Host stage
- Adult
- Isolation source
- Pacific oyster
- Pool/Individual
- Unknown
- Sample conservation method
- Unknown
- Sequencing technology
- Illumina
- Sequencer
- MiSeq
- Information on sequencing
- Unknown
- Number of reads
- Unknown
- Sequence coverage
- 50
- Sequence size (BP)
- 4018023
- Pathogen charge
- Unknown
- Assembly
- idba_ud v. 1.0.6
- Genome type
- Partial
- Structure
- Unknown
- Name of submitter
- Unknown
- Organization
- Oregon State University
- Publication DOI
- Unknown
- Notes
- NA
- Number of contigs
- 221