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- Variations file (VCF)
Phylogenetic tree is currently in construction.
GENOMIC STRUCTURE - Help
In MoPSeq-DB, Vibrio aestuarianus chromosomes are artificially created for partial genomes. You can find futher explanations on the section II.1.a of the Design page.
Partial
METADATA
*TBD : To Be Determined; NA : Non-applicable
- Sample name
- S_16_14_A
- Genbank accession number
- GCA_029891185.1
- Strain
- S/16/14 A
- Isolate
- NA
- Host
- Magallana gigas
- Collection year
- 2014
- Collection date
- Unknown
- Country of origin
- Ireland
- Localisation
- Dungarvan
- Latitude/Longitude
- Unknown
- Nature of coordinates
- Unknown
- Host stage
- 0-1 year
- Isolation source
- Gill
- Pool/Individual
- Unknown
- Sample conservation method
- -80°C
- Sequencing technology
- Illumina
- Sequencer
- Miseq
- Information on sequencing
- Unknown
- Number of reads
- Unknown
- Sequence coverage
- 50
- Sequence size (BP)
- 4054045
- Pathogen charge
- Unknown
- Assembly
- SPAdes v. 3.13.1
- Genome type
- Partial
- Structure
- Unknown
- Name of submitter
- David Ryder
- Organization
- Cefas
- Publication DOI
- https://doi.org/10.1099/mgen.0.001078
- Notes
- subsp. Francensis
- Number of contigs
- 170