BACTERIA

Vibrio aestuarianus

Interactive visualisation of Vibrio aestuarianus phylogeny here.
Sample name Strain Isolate Host species Collection year Collection date Country of origin Localisation Latitude/Longitude Nature of coordinates Host stage Isolation source Pool/Individual Sample conservation method Sequencing technology Sequencer Information on sequencing Number of reads Sequence coverage Sequence size (BP) Pathogen charge Assembly Genome type Structure Name of submitter Organization Publication DOI Notes Number of contigs Genbank accession number
Sample name Strain Isolate Host species Collection year Collection date Country of origin Localisation Latitude/Longitude Nature of coordinates Host stage Isolation source Pool/Individual Sample conservation method Sequencing technology Sequencer Information on sequencing Number of reads Sequence coverage Sequence size (BP) Pathogen charge Assembly Genome type Structure Name of submitter Organization Publication DOI Notes Number of contigs Genbank accession number
267 01_032 01/032 NA Magallana gigas 2001 June 1, 2001 France Argenton Brittany Unknown Unknown Unknown Oyster hemolymph Individual -80°C Illumina HiSeq Unknown Unknown 50 4189337 Unknown Velvet v. 3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1016/j.syapm.2008.06.003 https://doi.org/10.1111/1462-2920.12699 subsp. Francensis 24 GCF_012689315.1
268 01_151 01/151 NA Magallana gigas 2001 July 11, 2001 France La Trinité sur mer Brittany Unknown Unknown Unknown Oyster hemolymph Individual -80°C Illumina HiSeq Unknown Unknown 50 4345154 Unknown Velvet v. 3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1016/j.syapm.2008.06.003 https://doi.org/10.1111/1462-2920.12699 subsp. Francensis 50 GCF_012689365.1
269 01_308 01/308 NA Magallana gigas 2001 Aug. 29, 2001 France Normandy Unknown Unknown Unknown Oyster hemolymph Individual -80°C Illumina HiSeq Unknown Unknown 50 4454396 Unknown Velvet v. 3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1016/j.syapm.2008.06.003 https://doi.org/10.1111/1462-2920.12699 subsp. Francensis 115 GCF_012689405.1
270 01-032 01-032 NA Magallana gigas 2001 Unknown France Argenton Brittany Unknown Unknown Unknown Oyster hemolymph Individual -80°C Unknown Unknown Unknown Unknown 100 4200460 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 39 GCF_944738075.1
271 01-151 01-151 NA Magallana gigas 2001 July 11, 2001 France Ile aux moines, Brittany 47348783N,002507670W Unknown Unknown Oyster hemolymph Individual -80°C Unknown Unknown Unknown Unknown 100 4361212 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 73 GCF_944738875.1
272 01-308 01-308 NA Magallana gigas 2001 Unknown France Normandy Unknown Unknown Unknown Oyster hemolymph Individual -80°C Unknown Unknown Unknown Unknown 100 4494743 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 161 GCF_944738005.1
273 02_041 02/041 CIP 109791T=LMG 24517T Magallana gigas 2002 June 5, 2002 France Argenton Brittany Unknown Unknown Unknown Oyster hemolymph Individual -80°C Sanger 454 Unknown Unknown 100 4196441 Unknown Newbler v. 3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1016/j.syapm.2008.06.003 https://doi.org/10.1111/1462-2920.12699 subsp. Francensis 8 GCF_012395215.1
274 02_092 02_092 NA Magallana gigas 2002 Aug. 8, 2002 France baie de quiberon - Men er Roué 47323529N,003046269W Unknown < 1 year Gills and mantle Individual -80°C PacBio Sequel II Unknown 12164 40 4239287 Unknown FLYE v. 2.8.3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade B 3 GCA_028858375.1
275 03_008T 03/008t 03/008 T= OY-0-002 = ATCC35048 = CAIM 592 = CCUG 28583 = CIP 102971 = NBRC 15629 = LMG 7909 = DSM 19606 Crassostrea sp. 1983 Unknown USA Oregon, Yaquina Bay Unknown Unknown Unknown Oyster Unknown Unknown Illumina MiSeq Unknown Unknown 28 4149197 Unknown SPAdes v. 3.11 Partial Unknown Aurelie Mesnil IFREMER Unknown NA 111 GCF_011090235.1
276 03008T 03/008t 03/008 T= OY-0-002 = ATCC35048 = CAIM 592 = CCUG 28583 = CIP 102971 = NBRC 15629 = LMG 7909 = DSM 19606 Crassostrea sp. 1983 Unknown USA Oregon, Yaquina Bay Unknown Unknown Unknown Oyster Unknown -80°C PacBio Sequel II Unknown 5069 40 4250170 Unknown Unknown Complete Unknown Agnes Travers Unknown Unknown NA 2 JAAZTU010000000
277 04_091_1T1 04_091_1T1 NA Ostrea edulis 2004 Sept. 16, 2004 France Rivière de l'Aven, Aven Poulguin - Brittany Bassin de Marennes Oléron - La Floride 47491700N,003446800W Approximated > 2 years Gills and mantle Individual -80°C Ion Torrent Unknown Unknown 1309844 48 4041953 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade B 155 GCA_028858415.1
278 07_115 07/115 NA Magallana gigas 2007 Unknown France Brittany, Aber Benoit Unknown Unknown Unknown Oyster Unknown -80°C Illumina HiSeq Unknown Unknown 50 4228650 Unknown Velvet v. 3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1016/j.syapm.2008.06.003 https://doi.org/10.1111/1462-2920.12699 subsp. cardii 28 GCF_012689305.1
279 07-115 07-115 NA Magallana gigas 2007 Unknown France Brittany, Aber Benoit Unknown Unknown Unknown Oyster Unknown -80°C Unknown Unknown Unknown Unknown 100 4241688 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 44 GCF_944738085.1
280 08_114_4T3 08_114_4T3 NA Magallana gigas 2008 July 21, 2008 France Carteret - Saint Germain sur Ay (50) 49125910N,001388460W Approximated 1-2 years Gills and mantle Individual -80°C PacBio Sequel II Unknown 5895 40 4256805 Unknown FLYE v. 2.8.3 Complete Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade B 2 GCA_028857095.1
281 09_045_2T1 09_045_2T1 NA Magallana gigas 2009 May 5, 2009 France Rivière de Penzé - Baie de Morlaix 48403073N,003559502W Approximated > 2 years Gills and mantle Individual -80°C Illumina Unknown Unknown 3483062 127 3965744 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 156 GCA_028858355.1
282 10_092_7MT1 10_092 7MT1 NA Magallana gigas 2010 June 15, 2010 France Bassin d'Arcachon - Le Tès 44399922N,001082389W Approximated < 1 year Gills and mantle Individual -80°C PacBio Sequel II Unknown 16467 40 4283838 Unknown FLYE v. 2.8.3 Complete Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade B 2 GCA_028857075.1
283 11_034_1T1 11_034_1T1 NA Magallana gigas 2011 April 27, 2011 France Etang de Thau – Marseillan - zone conchylicole 43222695N,003335932E Approximated > 2 years Gills and mantle Individual -80°C Illumina Unknown Unknown 2835163 102 3964481 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 155 GCA_028858305.1
284 11_183_10T2 11_183_10T2 NA Magallana gigas 2011 Nov. 7, 2011 France Etang de Diana Corse - zone conchylicole 42077649N,009321151E Approximated > 2 years Gills and mantle Individual -80°C Illumina Unknown Unknown 2523405 90 3996458 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 163 GCA_028858285.1
285 11-KB19 11-KB19 NA Oyster 2011 March 15, 2011 Spain Fangar Bay Unknown Unknown Unknown Oyster Unknown Unknown Unknown Unknown Unknown Unknown 100 5003302 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 748 GCF_944738855.1
286 11-U17 11-U17 NA Zooplankton 2011 May 30, 2011 Italy Goro lagoon Unknown Unknown Unknown Zooplankton Unknown Unknown Unknown Unknown Unknown Unknown 100 4340762 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 725 GCF_944739605.1
287 12_016 12_016 NA Magallana gigas 2012 March 12, 2012 France Bassin de Marennes Oléron - La Floride (écloserie Ifremer) 45480366N,001088727W Approximated 1-2 years Gills and mantle Individual -80°C PacBio Sequel II Unknown 9203 40 4329368 Unknown FLYE v. 2.8.3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 4 GCA_028858495.1
288 12_063 12_063 NA Magallana gigas 2012 June 6, 2012 France Rade de Brest - Daoulas - Pointe du Château Unknown Unknown 1-2 years Gills and mantle Individual -80°C Unknown Unknown Unknown Unknown 74 4521338 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade B 141 GCA_028858275.1
289 12_122_3T3 12/122 3T3 LMG 31436T=DSM 109723T Cerastoderma edule 2012 Aug. 27, 2012 France Baie de Somme Normandy 50140274N,001341913E Approximated < 1 year Gills and mantle Individual -80°C Illumina MiSeq Unknown Unknown 21 4350651 Unknown SPAdes v. 3.11 Partial Unknown Aurelie Mesnil IFREMER Unknown subsp. cardii 205 GCF_011090275.1
290 12-016a 12-016a NA Magallana gigas 2012 March 12, 2012 France Bassin de Marennes Oléron - La Floride (écloserie Ifremer) 45480366N,001088727W Approximated 1-2 years Gills and mantle Individual -80°C Unknown Unknown Unknown Unknown 100 4249459 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 52 GCF_944739305.1
291 12-055 12-055 NA Magallana gigas 2012 June 5, 2012 France Agnas Charente Maritime Unknown Unknown Unknown Oyster Individual -80°C Unknown Unknown Unknown Unknown 100 4247975 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 52 GCF_944738025.1
292 12-063 12-063 NA Magallana gigas 2012 June 6, 2012 France Rade de Brest - Daoulas - Pointe du Château Unknown Unknown 1-2 years Gills and mantle Individual -80°C Unknown Unknown Unknown Unknown 100 4507338 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 141 GCF_944739635.1
293 12-122 12-122 NA Cerastoderma edule 2012 Aug. 27, 2012 France Baie de Somme Normandy 50140274N,001341913E Approximated < 1 year Gills and mantle Individual -80°C Unknown Unknown Unknown Unknown 100 4900955 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 401 GCF_944738745.1
303 151-ITT-15-cp-1 151-ITT-15-cp-1 NA Ruditapes sp. 2015 May 28, 2015 Italy Scardovari lagoon Unknown Unknown Unknown Gills and mantle Individual -80°C Illumina Unknown Unknown 2107132 78 3934460 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 195 GCA_028857845.1
294 12-128a 12-128a NA Magallana gigas 2012 Sept. 18, 2012 France Brittany, baie de Morlaix, Penzé - Varquez 48403073N,003559502W Approximated > 2 years Gills and mantle Individual -80°C Unknown Unknown Unknown Unknown 100 4239439 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 66 GCF_944738045.1
295 12-130 12-130 NA Magallana gigas 2012 Sept. 17, 2012 France Agnas Charente Maritime Unknown Unknown < 1 year Oyster Individual -80°C Unknown Unknown Unknown Unknown 100 4286418 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 80 GCF_944738065.1
296 12-142 12-142 NA Oyster 2012 Unknown France Normandy Unknown Unknown Unknown Oyster Unknown Unknown Unknown Unknown Unknown Unknown 100 4376418 Unknown Unknown Partial Unknown Unknown STATION BIOLOGIQUE DE ROSCOFF Unknown NA 115 GCF_944738535.1
297 120-ITT-15-cp-5 120-ITT-15-cp-5 NA Ruditapes philippinarum 2015 May 28, 2015 Italy Scardovari lagoon Unknown Unknown Unknown Gills and mantle Individual -80°C Illumina Unknown Unknown 2448050 84 4074080 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 NA 111 GCA_028857855.1
298 14R044 14R044 NA Magallana gigas 2014 July 19, 2013 France Bassin de Marennes Oléron - La Floride Unknown Unknown > 2 years Gills and mantle Individual -80°C PacBio Sequel II Unknown 5284 40 4315706 Unknown FLYE v. 2.8.3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 4 GCA_028858295.1
299 15_061_1T1 15/061_1T1 NA Cerastoderma edule 2015 June 29, 2015 France Baie des Veys, gisement de Brévands Unknown Unknown Mix Gills and mantle Individual -80°C Illumina MiSeq Unknown Unknown 26 4099007 Unknown SPAdes v. 3.11 Partial Unknown Aurelie Mesnil IFREMER Unknown NA 219 GCF_011090225.1
300 15_064_3T2 15/064 3T2 LMG 31439=DSM 109719 Cerastoderma edule 2015 July 1, 2015 France Baie de Saint-Brieuc – Binic 48315512N,002412983W Approximated Mix Gills and mantle Individual -80°C Illumina MiSeq Unknown Unknown 22 4024279 Unknown SPAdes v. 3.11 Partial Unknown Aurelie Mesnil IFREMER Unknown subsp. cardii 226 GCF_011090265.1
301 15_064_4T2 15_064_4T2 NA Cerastoderma edule 2015 July 1, 2015 France Baie de Saint-Brieuc – Binic 48315512N,002412983W Approximated Mix Gills and mantle Individual -80°C PacBio Sequel II Unknown 4546 40 4363256 Unknown FLYE v. 2.8.3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 3 GCA_028858255.1
302 15_075_3T2 15/075 3T2 LMG 31440=DSM 109720 Cerastoderma edule 2015 July 29, 2015 France Baie de Somme Unknown Unknown Mix Gills and mantle Individual -80°C Ion Torrent Unknown Unknown Unknown 93 4394098 Unknown SPAdes v. 3.11 Partial Unknown Aurelie Mesnil IFREMER Unknown subsp. cardii 205 GCF_011090175.1
304 16_055_1T1 16_055_1T1 NA Mytilus edulis 2016 April 26, 2016 France Estuaire de la Vilaine, Les Granges Unknown Unknown 1-2 years Gills and mantle Individual -80°C Ion Torrent Unknown Unknown 1009749 78 4043574 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 NA 187 GCA_028858235.1
305 16_055_5T1 16_055_5T1 NA Mytilus edulis 2016 April 26, 2016 France Estuaire de la Vilaine, Les Granges Unknown Unknown 1-2 years Gills and mantle Individual -80°C Ion Torrent Unknown Unknown 885145 89 4113872 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 NA 121 GCA_028858185.1
306 18_033_7T1 18_033_7T1 NA Cerastoderma edule 2018 May 18, 2018 France Baie de Somme, secteur nord Unknown Unknown Mix Gills and mantle Individual -80°C PacBio Sequel II Unknown 5700 40 4392734 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 8 GCA_028858205.1
307 18_047_1T2 18_047_1T2 NA Magallana gigas 2018 June 13, 2018 France Baie des Veys, lot Ecoscopa Unknown Unknown 1-2 years Gills and mantle Individual -80°C Ion Torrent Unknown Unknown 1770537 137 3955082 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade B 160 GCA_028858175.1
308 19_040_1T1 19_040_1T1 NA Cerastoderma edule 2019 April 23, 2019 France Baie d'Authie - Fort Mahon Unknown Unknown > 2 years Whole individual Individual -80°C Illumina Unknown Paired-end 2646135 88 4306003 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 177 GCA_028858155.1
309 19_051_1T1 19_051_1T1 NA Cerastoderma edule 2019 May 6, 2019 France Baie d'Authie - Fort Mahon Unknown Unknown > 2 years Whole individual Individual -80°C Illumina Unknown Paired-end 3063933 104 4308599 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 176 GCA_028858135.1
310 19_063_1T1 19_063_1T1 NA Cerastoderma edule 2019 May 20, 2019 France Baie d'Authie - Fort Mahon Unknown Unknown > 2 years Whole individual Individual -80°C Illumina Unknown Unknown 2704260 95 4078673 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 77 GCA_028858095.1
311 19_064_11T1 19_064_11T1 NA Cerastoderma edule 2019 May 20, 2019 France Baie d'Authie - Fort Mahon Unknown Unknown 1-2 years Whole individual Individual -80°C Illumina Unknown Unknown 2951172 100 4373357 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 112 GCA_028858065.1
312 19_064_12T1 19_064_12T1 NA Cerastoderma edule 2019 May 20, 2019 France Baie d'Authie - Fort Mahon Unknown Unknown 1-2 years Whole individual Individual -80°C Illumina Unknown Unknown 2991252 105 4076225 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 78 GCA_028858075.1
313 19_064_14T1 19_064_14T1 NA Cerastoderma edule 2019 May 20, 2019 France Baie d'Authie - Fort Mahon Unknown Unknown 1-2 years Whole individual Individual -80°C Illumina Unknown Unknown 2719134 97 4027341 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 68 GCA_028858055.1
314 19_064_15T1 19_064_15T1 NA Cerastoderma edule 2019 May 20, 2019 France Baie d'Authie - Fort Mahon Unknown Unknown 1-2 years Whole individual Individual -80°C Illumina Unknown Unknown 2651997 93 4234648 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 185 GCA_028858035.1
315 19_064_18T1 19_064_18T1 NA Cerastoderma edule 2019 May 20, 2019 France Baie d'Authie - Fort Mahon Unknown Unknown 1-2 years Whole individual Individual -80°C Illumina Unknown Unknown 2818333 102 3959489 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 65 GCA_028857945.1
316 19_069_1T1 19_069_1T1 NA Cerastoderma edule 2019 June 4, 2019 France Baie d'Authie - Fort Mahon Unknown Unknown > 2 years Whole individual Individual -80°C Illumina Unknown Unknown 3168428 111 4198302 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 128 GCA_028857965.1
317 20_053_1T1 20_053_1T1 NA Magallana gigas 2020 May 29, 2020 France Etang de Thau, Loupian Unknown Unknown > 2 years Gills and mantle Individual -80°C Illumina Unknown Unknown 2132870 76 3996666 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 158 GCA_028857985.1
318 21_BS1 21_BS1 NA Sea water 2021 June 28, 2021 Bulgaria Black sea - depth 14.5m 42°27.808'N,27°31.012'E Approximated Unknown Gills and mantle Individual -80°C Illumina Unknown Paired-end 2333396 70 4131420 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 NA 169 GCA_028857935.1
319 21_BS2 21_BS2 NA Sea water 2021 June 18, 2021 Bulgaria Black sea - depth 15.1m 43°10.671'N,27°56.484'E Approximated Unknown Gills and mantle Individual -80°C Illumina Unknown Paired-end 2331503 76 4041420 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 NA 125 GCA_028857975.1
320 21_BS6 21_BS6 NA Sea water 2021 June 27, 2021 Bulgaria Black sea - depth 15.5m 42°40.503'N,27°43.602'E Approximated Unknown Gills and mantle Individual -80°C Illumina Unknown Paired-end 2060644 64 4141863 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 NA 118 GCA_028857835.1
321 IRTA-19-103 IRTA-19-103 NA Magallana gigas 2019 June 28, 2019 Spain Delta del Ebro - Bay of the Fangar Unknown Unknown > 2 years Gills and mantle Individual -80°C Illumina Unknown Unknown 1960096 75 3926156 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 152 GCA_028857865.1
322 LMG_7909 LMG 7909 03008T souche type Oyster 1983 Unknown USA Oregon, Yaquina Bay Unknown Unknown Unknown Unknown Unknown -80°C Illumina MiSeq Unknown Unknown 50 4149197 Unknown SPAdes v. 3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1016/j.syapm.2008.06.003 https://doi.org/10.1111/1462-2920.12699 NA 111 GCF_012395185.1
323 MI_20_20 MI_20_20 NA Magallana gigas 2020 Sept. 15, 2020 Ireland Co. Donegal – Gweebarra Unknown Unknown > 2 years Gills and mantle Individual -80°C Illumina Unknown Unknown 2306952 84 3997894 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 158 GCA_028857875.1
324 MI_24_09 MI_24_09 NA Magallana gigas 2009 July 22, 2009 Ireland Co. Galway - Castlemaine Harbour Unknown Unknown > 2 years Gills and mantle Individual -80°C Illumina Unknown Unknown 3586268 124 3990831 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 57 GCA_028857765.1
325 MI_41_19 MI_41_19 NA Magallana gigas 2019 Aug. 20, 2019 Ireland Co. Waterford – Dungaravan Unknown Unknown > 2 years Gills and mantle Individual -80°C Illumina Unknown Unknown 1571649 60 3995541 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 160 GCA_028857785.1
326 MI_47_15 MI_47_15 NA Magallana gigas 2015 July 30, 2015 Ireland Co. Kerry - Castlemaine Harbour Unknown Unknown < 1 year Gills and mantle Individual -80°C Illumina Unknown Unknown 2270506 84 3964795 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 159 GCA_028857735.1
327 MI_57_15 MI_57_15 NA Magallana gigas 2015 Aug. 26, 2015 Ireland Co. Cork – Oysterhaven Unknown Unknown > 2 years Gills and mantle Individual -80°C Illumina Unknown Unknown 2463083 90 3998125 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 159 GCA_028857755.1
328 MI_58_09 MI_58_09 NA Magallana gigas 2009 July 31, 2009 Ireland Co. Galway - Streamstown Bay Unknown Unknown 1-2 years Gills and mantle Individual -80°C Illumina Unknown Unknown 3536528 113 4051953 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade B 148 GCA_028857745.1
329 O-00-16-10 O-00-16-10 NA Magallana gigas Unknown Unknown USA Puget Sound Washington Unknown Unknown Adult Pacific oyster Unknown Unknown Illumina MiSeq Unknown Unknown 50 4018023 Unknown idba_ud v. 1.0.6 Partial Unknown Unknown Oregon State University Unknown NA 221 GCF_013114495.1
330 SC_3670 SC_3670 NA Magallana gigas 2011 Oct. 17, 2011 Scotland Highlands and Islands Unknown Unknown Mix Gills and mantle Individual -80°C Illumina Unknown Unknown 1953553 82 3968067 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 182 GCA_028857705.1
331 SC_3770 SC_3770 NA Magallana gigas 2012 Sept. 10, 2012 Scotland Argyll and Bute Unknown Unknown Mix Gills and mantle Individual -80°C Illumina Unknown Unknown 2182963 84 3934795 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 169 GCA_028857675.1
332 SC_4077 SC_4077 NA Magallana gigas 2015 Sept. 30, 2015 Scotland Highlands and Islands Unknown Unknown Mix Gills and mantle Individual -80°C Illumina Unknown Unknown 1835854 78 3928281 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. Francensis clade A 182 GCA_028857635.1
333 U17 U17 NA Zooplankton 2011 May 30, 2011 Italy Veneto - Goro lagoon Unknown Unknown Unknown Gills and mantle Individual -80°C PacBio Sequel II Unknown 7199 40 4256999 Unknown FLYE v. 2.8.3 Complete Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 subsp. cardii 2 GCA_029867305.1
334 U18 U18 NA Zooplankton 2011 May 30, 2011 Italy Veneto - Goro lagoon Unknown Unknown Unknown Gills and mantle Individual -80°C Unknown Unknown Unknown Unknown 200 4051404 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 NA 130 GCA_028858475.1
335 U29 U29 NA Mytilus sp. 2011 May 30, 2011 Italy Veneto - Goro lagoon Unknown Unknown Unknown Gills and mantle Individual -80°C PacBio Sequel II Unknown 6353 40 4386674 Unknown FLYE v. 2.8.3 Complete Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 NA 2 GCA_029867285.1
336 U36 U36 NA Magallana gigas 2011 May 30, 2011 Italy Veneto - Goro lagoon Unknown Unknown Unknown Gills and mantle Individual -80°C PacBio Sequel II Unknown 40304 40 4144461 Unknown FLYE v. 2.8.3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 NA 3 GCA_028858425.1
337 U40 U40 NA Magallana gigas 2011 May 30, 2011 Italy Veneto - Goro lagoon Unknown Unknown Unknown Gills and mantle Individual -80°C PacBio Sequel II Unknown 4943 40 4167398 Unknown FLYE v. 2.8.3 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 NA 6 GCA_028858395.1
338 U8 U8 NA Magallana gigas 2011 May 30, 2011 Italy Veneto - Goro lagoon Unknown Unknown Unknown Gills and mantle Individual -80°C Ion Torrent Unknown Unknown 1730204 134 4051861 Unknown SPAdes v. 3.13.1 Partial Unknown Aurelie Mesnil IFREMER https://doi.org/10.1111/mec.16910 NA 86 GCA_028858405.1
339 S_02_10 S/02/10 NA Magallana gigas 2010 Unknown Ireland Poularone Creek Unknown Unknown 0 year Gill Unknown -80°C Illumina Miseq Unknown Unknown 50 4060458 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 175 GCA_029890865.1
340 S_10_15_B S/10/15 B NA Magallana gigas 2015 Unknown Ireland Dungarvan Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4038653 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 169 GCA_029890985.1
341 S_11_15_B S/11/15 B NA Magallana gigas 2015 Unknown Ireland Woodstown Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4038251 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 159 GCA_029890685.1
342 S_15_13_B S/15/13 B NA Magallana gigas 2013 Unknown Ireland Kinsale Unknown Unknown 1 year Gill Unknown -80°C Illumina Miseq Unknown Unknown 50 4024641 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 157 GCA_029890785.1
343 S_15_14_A S/15/14 A NA Magallana gigas 2014 Unknown Ireland Achill Unknown Unknown 0 year Gill Unknown -80°C Illumina Miseq Unknown Unknown 50 4036957 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 162 GCA_029891165.1
344 S_16_14_A S/16/14 A NA Magallana gigas 2014 Unknown Ireland Dungarvan Unknown Unknown 0-1 year Gill Unknown -80°C Illumina Miseq Unknown Unknown 50 4054045 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 170 GCA_029891185.1
345 S_16_15_B S/16/15 B NA Magallana gigas 2015 Unknown Ireland Woodstown Unknown Unknown 1 year Gill Unknown -80°C Illumina Miseq Unknown Unknown 50 4033466 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 199 GCA_029891065.1
346 S_17_14_AB S/17/14 AB NA Magallana gigas 2014 Unknown Ireland Woodstown Unknown Unknown 3 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4066096 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 226 GCA_029891205.1
347 S_17_15_A S/17/15 A NA Magallana gigas 2015 Unknown Ireland Dungarvan Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4062956 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 191 GCA_029890965.1
348 S_21_13_C S/21/13 C NA Magallana gigas 2013 Unknown Ireland Oysterhaven Unknown Unknown 0-2 years Gill Unknown -80°C Illumina Miseq Unknown Unknown 50 4066452 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 147 GCA_029891305.1
349 S_25_09 S/25/09 NA Magallana gigas 2009 Unknown Ireland Loughros Beag Unknown Unknown 0-1 year Gill Unknown -80°C Illumina Miseq Unknown Unknown 50 4091614 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 168 GCA_029891225.1
350 S_27_15_A S/27/15 A NA Magallana gigas 2015 Unknown Ireland Dungarvan Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4025836 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 182 GCA_029890825.1
351 S_28_15_B S/28/15 B NA Magallana gigas 2015 Unknown Ireland Woodstown Unknown Unknown 0 year Gill Unknown -80°C Illumina Miseq Unknown Unknown 50 4020974 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 211 GCA_029890935.1
352 S_37_14_A S/37/14 A NA Magallana gigas 2014 Unknown Ireland Kinsale Unknown Unknown 1 year Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4012731 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 211 GCA_029890705.1
353 S_38_15_A S/38/15 A NA Magallana gigas 2015 Unknown Ireland Castlemaine Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4035788 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 205 GCA_029891105.1
354 S_43_14_A S/43/14 A NA Magallana gigas 2014 Unknown Ireland Kinsale Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4067453 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 192 GCA_029890525.1
355 S_44_15 S/44/15 NA Magallana gigas 2015 Unknown Ireland Donegal Bay Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4060616 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 166 GCA_029890765.1
356 S_52_14_A S/52/14 A NA Magallana gigas 2014 Unknown Ireland Castlemaine Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4063190 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 204 GCA_029890635.1
357 S_58_15 S/58/15 NA Magallana gigas 2015 Unknown Ireland Donegal Bay Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4160507 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 182 GCA_029891015.1
358 S_59_15 S/59/15 NA Magallana gigas 2015 Unknown Ireland Donegal Bay Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4166976 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1101/2023.04.06.535062 subsp. Francensis 243 GCA_029890805.1
359 S_60_15_A S/60/15 A NA Magallana gigas 2015 Unknown Ireland Dungarvan Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4159671 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 197 GCA_029890815.1
360 S_64_15_A S/64/15 A NA Magallana gigas 2015 Unknown Ireland Kinsale Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4056049 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 210 GCA_029890885.1
361 S_65_15_B S/65/15 B NA Magallana gigas 2015 Unknown Ireland Dungarvan Unknown Unknown 2 years Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4068949 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 144 GCA_029891005.1
362 S_93_15_A S/93/15 A NA Magallana gigas 2015 Unknown Ireland Gweedore Unknown Unknown 2 year Haemolymph Unknown -80°C Illumina Miseq Unknown Unknown 50 4062734 Unknown SPAdes v. 3.13.1 Partial Unknown David Ryder Cefas https://doi.org/10.1099/mgen.0.001078 subsp. Francensis 191 GCA_029891275.1

TBD : To Be Determined; NA : Non-applicable