PROTOZOA

Perkinsus olseni

Interactive visualisation of Perkinsus olseni phylogeny here.
Sample name Strain Isolate Host species Collection year Collection date Country of origin Localisation Latitude/Longitude Nature of coordinates Host stage Isolation source Pool/Individual Sample conservation method Sequencing technology Sequencer Information on sequencing Number of reads Sequence coverage Sequence size (BP) Pathogen charge Assembly Genome type Structure Name of submitter Organization Publication DOI Notes Number of contigs Genbank accession number
Sample name Strain Isolate Host species Collection year Collection date Country of origin Localisation Latitude/Longitude Nature of coordinates Host stage Isolation source Pool/Individual Sample conservation method Sequencing technology Sequencer Information on sequencing Number of reads Sequence coverage Sequence size (BP) Pathogen charge Assembly Genome type Structure Name of submitter Organization Publication DOI Notes Number of contigs Genbank accession number
262 00978-12 NA 00978-12 Haliotis rubra 2012 Unknown Australia South Australia Unknown Unknown Unknown Unknown Unknown Unknown Illumina and Oxford Nanopore Technologies NextSeq and MinION Expected final version : yes Unknown 552 63092640 Unknown Flye v. 2.4 Partial Unknown Daniel Bogema NSW 10.1016/j.ygeno.2020.09.066 NA Unknown GCA_013115135.1
263 ATCC_PRA-179 NA ATCC PRA-179 Ruditapes philippinarum 2002 Sept. 1, 2002 Japan Mie Unknown Unknown Unknown Unknown Unknown Unknown Illumina NextSeq 500 Expected final version : yes Unknown 266 39860647 Unknown SPAdes v. 3.13.0 Partial Unknown Daniel Bogema NSW 10.1016/j.ygeno.2020.09.064 NA 3531 GCA_013115115.1
264 ATCC_PRA-205 NA ATCC PRA-205 Austrovenus stutchburyi 2005 May 1, 2005 New Zealand North Island Unknown Unknown Unknown Unknown Unknown Unknown Illumina NextSeq 500 Expected final version : yes Unknown 269 87361030 Unknown SPAdes v. 3.13.0 Partial Unknown Daniel Bogema NSW 10.1016/j.ygeno.2020.09.068 NA 38757 GCA_013115895.1
265 ATCC_PRA-207 NA ATCC PRA-207 Austrovenus stutchburyi 2005 May 1, 2005 New Zealand North Island Unknown Unknown Unknown Unknown Unknown Unknown Illumina NextSeq 500 Expected final version : yes Unknown 254 90367079 Unknown SPAdes v. 3.13.0 Partial Unknown Daniel Bogema NSW 10.1016/j.ygeno.2020.09.067 NA 41794 GCA_013115865.1
266 ATCC_PRA-31 NA ATCC PRA-31 Ruditapes decussatus 2003 Feb. 1, 2003 Spain Gallicia Unknown Unknown Unknown Unknown Unknown Unknown Illumina NextSeq 500 Expected final version : yes Unknown 225 39786158 Unknown SPAdes v. 3.13.0 Partial Unknown Daniel Bogema NSW 10.1016/j.ygeno.2020.09.065 NA 3621 GCA_013115125.1

TBD : To Be Determined; NA : Non-applicable